CN09_18435 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_18435

Enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology (277 aa)

Predicted Functional Partners:

CN09_25000

0.984

CN09_29430

0.983

pcaF

0.982

CN09_28910

0.982

CN09_15300

0.978

CN09_12330

0.977

CN09_20565

0.976

CN09_01285

0.972

CN09_30415

0.972

CN09_30135

0.969

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_01285	CN09_12330	CN09_01285	CN09_12330	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology	Isovaleryl-CoA dehydrogenase; Catalyzes the formation of 3-methylbut-2-enoyl CoA from 3-methylbutanoyl CoA; Derived by automated computational analysis using gene prediction method: Protein Homology	0.968
CN09_01285	CN09_15300	CN09_01285	CN09_15300	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology	Acetyl-coa acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family	0.528
CN09_01285	CN09_18435	CN09_01285	CN09_18435	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology	Enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.972
CN09_01285	CN09_20565	CN09_01285	CN09_20565	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology	Acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.972
CN09_01285	CN09_25000	CN09_01285	CN09_25000	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology	Acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.968
CN09_01285	CN09_28910	CN09_01285	CN09_28910	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology	Acetyl-coa acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family	0.528
CN09_01285	CN09_29430	CN09_01285	CN09_29430	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology	Acetyl-coa acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family	0.528
CN09_01285	CN09_30135	CN09_01285	CN09_30135	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.968
CN09_01285	CN09_30415	CN09_01285	CN09_30415	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.968
CN09_01285	pcaF	CN09_01285	CN09_24045	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology	Beta-ketoadipyl coa thiolase; Belongs to the thiolase-like superfamily. Thiolase family	0.587
CN09_12330	CN09_01285	CN09_12330	CN09_01285	Isovaleryl-CoA dehydrogenase; Catalyzes the formation of 3-methylbut-2-enoyl CoA from 3-methylbutanoyl CoA; Derived by automated computational analysis using gene prediction method: Protein Homology	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.968
CN09_12330	CN09_15300	CN09_12330	CN09_15300	Isovaleryl-CoA dehydrogenase; Catalyzes the formation of 3-methylbut-2-enoyl CoA from 3-methylbutanoyl CoA; Derived by automated computational analysis using gene prediction method: Protein Homology	Acetyl-coa acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family	0.542
CN09_12330	CN09_18435	CN09_12330	CN09_18435	Isovaleryl-CoA dehydrogenase; Catalyzes the formation of 3-methylbut-2-enoyl CoA from 3-methylbutanoyl CoA; Derived by automated computational analysis using gene prediction method: Protein Homology	Enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.977
CN09_12330	CN09_25000	CN09_12330	CN09_25000	Isovaleryl-CoA dehydrogenase; Catalyzes the formation of 3-methylbut-2-enoyl CoA from 3-methylbutanoyl CoA; Derived by automated computational analysis using gene prediction method: Protein Homology	Acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.737
CN09_12330	CN09_28910	CN09_12330	CN09_28910	Isovaleryl-CoA dehydrogenase; Catalyzes the formation of 3-methylbut-2-enoyl CoA from 3-methylbutanoyl CoA; Derived by automated computational analysis using gene prediction method: Protein Homology	Acetyl-coa acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family	0.637
CN09_12330	CN09_29430	CN09_12330	CN09_29430	Isovaleryl-CoA dehydrogenase; Catalyzes the formation of 3-methylbut-2-enoyl CoA from 3-methylbutanoyl CoA; Derived by automated computational analysis using gene prediction method: Protein Homology	Acetyl-coa acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family	0.567
CN09_12330	pcaF	CN09_12330	CN09_24045	Isovaleryl-CoA dehydrogenase; Catalyzes the formation of 3-methylbut-2-enoyl CoA from 3-methylbutanoyl CoA; Derived by automated computational analysis using gene prediction method: Protein Homology	Beta-ketoadipyl coa thiolase; Belongs to the thiolase-like superfamily. Thiolase family	0.554
CN09_15300	CN09_01285	CN09_15300	CN09_01285	Acetyl-coa acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.528
CN09_15300	CN09_12330	CN09_15300	CN09_12330	Acetyl-coa acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family	Isovaleryl-CoA dehydrogenase; Catalyzes the formation of 3-methylbut-2-enoyl CoA from 3-methylbutanoyl CoA; Derived by automated computational analysis using gene prediction method: Protein Homology	0.542
CN09_15300	CN09_18435	CN09_15300	CN09_18435	Acetyl-coa acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family	Enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.978

page 1 of 4

Server load: low (10%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2022

Credits

Access

Info

About