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CN09_18515 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_18515" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_18515Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (601 aa)    
Predicted Functional Partners:
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (1000 aa)
              0.999
CN09_06240
Fumarate hydratase class I; Catalyzes the reversible hydration of fumarate to (S)- malate; Belongs to the class-I fumarase family (535 aa)
              0.999
CN09_18525
Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology (492 aa)
 
          0.881
CN09_18480
Amidohydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (220 aa)
 
          0.820
CN09_06305
Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source (559 aa)
              0.805
CN09_31785
Isochorismatase; Derived by automated computational analysis using gene prediction method- Protein Homology (196 aa)
 
          0.800
CN09_12630
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (227 aa)
 
          0.785
CN09_21085
Hydroxyproline-2-epimerase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the proline racemase family (332 aa)
 
          0.683
CN09_08270
Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (572 aa)
              0.678
CN09_17670
Exclusion suppressor FxsA; Derived by automated computational analysis using gene prediction method- Protein Homology (178 aa)
   
        0.660
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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