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CN09_18530 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_18530" - Cupin in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_18530Cupin; Derived by automated computational analysis using gene prediction method- Protein Homology (328 aa)    
Predicted Functional Partners:
CN09_00360
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (300 aa)
 
 
 
  0.700
CN09_26095
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (304 aa)
 
 
 
  0.650
CN09_18535
Hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (247 aa)
 
     
  0.647
CN09_19850
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (311 aa)
   
          0.563
CN09_01200
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (215 aa)
 
     
  0.466
CN09_18540
D-threo-aldose 1-dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (337 aa)
     
      0.430
CN09_30360
3-beta hydroxysteroid dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (297 aa)
 
          0.411
ftrA
Transcriptional regulator; Upregulated by FixLJ/FixK under oxygen limitation; involved in regulation of genes involved in carbon and amino acid metabolism; Derived by automated computational analysis using gene prediction method- Protein Homology (338 aa)
 
 
 
  0.402
CN09_27380
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (274 aa)
   
          0.401
CN09_04555
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (269 aa)
   
          0.400
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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