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CN09_18560 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_18560" - Lactate dehydrogenase in Agrobacterium rhizogenes
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_18560Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (1702 aa)    
Predicted Functional Partners:
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (1000 aa)
   
 
  0.999
CN09_18570
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (201 aa)
          0.999
CN09_18565
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (133 aa)
 
          0.999
topA
DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA super [...] (888 aa)
   
 
  0.999
CN09_19315
Serine recombinase; Derived by automated computational analysis using gene prediction method- Protein Homology (689 aa)
         
  0.999
CN09_19630
ArdC antirestriction protein; Derived by automated computational analysis using gene prediction method- Protein Homology (309 aa)
 
          0.999
CN09_33825
ArdC antirestriction protein; Derived by automated computational analysis using gene prediction method- Protein Homology (305 aa)
 
          0.999
CN09_33755
Conjugal transfer protein TraG; Derived by automated computational analysis using gene prediction method- Protein Homology (644 aa)
 
     
  0.999
CN09_00705
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (988 aa)
   
 
  0.999
CN09_33640
Chromosome partitioning protein ParA; Derived by automated computational analysis using gene prediction method- Protein Homology (398 aa)
 
   
  0.999
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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