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CN09_18645 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_18645" - ABC transporter permease in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
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[Homology]
Score
CN09_18645ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (320 aa)    
Predicted Functional Partners:
CN09_18640
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (316 aa)
   
 
0.993
CN09_18650
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (498 aa)
 
  0.988
CN09_18655
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (356 aa)
 
   
  0.982
CN09_33770
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (364 aa)
 
   
  0.954
CN09_18635
Hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (227 aa)
              0.829
CN09_00545
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (358 aa)
 
     
  0.781
CN09_30845
D-ribose transporter ATP-binding protein; With RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; Derived by automated computational analysis using gene prediction method- Protein Homology (492 aa)
   
  0.781
CN09_22120
D-ribose transporter ATP-binding protein; With RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; Derived by automated computational analysis using gene prediction method- Protein Homology (506 aa)
   
  0.772
CN09_20965
Sugar ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (492 aa)
   
  0.758
CN09_23775
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (516 aa)
   
  0.756
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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