CN09_18745 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_18745

Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology (272 aa)

Predicted Functional Partners:

CN09_32925

0.733

CN09_18140

0.599

CN09_19075

0.544

CN09_00515

0.527

CN09_33010

0.526

CN09_29795

0.524

CN09_24500

0.474

CN09_12885

0.466

CN09_17170

0.433

CN09_25960

0.418

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

page 1 of 3

Network

Neighborhood

Textmining

Cooccurrence

Experiments

Fusion

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_00515	CN09_17170	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.778
CN09_00515	CN09_18745	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.527
CN09_12885	CN09_17170	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.416
CN09_12885	CN09_18140	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.594
CN09_12885	CN09_18745	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.466
CN09_12885	CN09_19075	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology	Endonuclease DDE; Derived by automated computational analysis using gene prediction method: Protein Homology	0.619
CN09_12885	CN09_24500	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology	Endonuclease DDE; Derived by automated computational analysis using gene prediction method: Protein Homology	0.558
CN09_12885	CN09_25960	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.533
CN09_12885	CN09_33010	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.402
CN09_17170	CN09_00515	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.778
CN09_17170	CN09_12885	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.416
CN09_17170	CN09_18745	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.433
CN09_17170	CN09_19075	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology	Endonuclease DDE; Derived by automated computational analysis using gene prediction method: Protein Homology	0.451
CN09_17170	CN09_24500	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology	Endonuclease DDE; Derived by automated computational analysis using gene prediction method: Protein Homology	0.445
CN09_17170	CN09_33010	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.782
CN09_18140	CN09_12885	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.594
CN09_18140	CN09_18745	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.599
CN09_18745	CN09_00515	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.527
CN09_18745	CN09_12885	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.466
CN09_18745	CN09_17170	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.433