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CN09_18875 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_18875" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_18875Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (342 aa)    
Predicted Functional Partners:
CN09_18870
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (593 aa)
 
   
  0.978
CN09_32190
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (265 aa)
 
   
  0.801
CN09_33365
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (272 aa)
 
   
  0.766
CN09_23105
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (266 aa)
 
   
  0.751
CN09_12765
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (250 aa)
 
   
  0.747
CN09_11880
UPF0260 protein CN09_11880; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the UPF0260 family (161 aa)
              0.738
CN09_32185
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (290 aa)
 
   
  0.726
CN09_23100
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (290 aa)
 
   
  0.705
CN09_33370
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (299 aa)
 
   
  0.682
CN09_12760
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (299 aa)
 
   
  0.589
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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