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CN09_18990 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_18990" - Cytochrome C2 in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Databases
Textmining
[Homology]
Score
CN09_18990Cytochrome C2; Derived by automated computational analysis using gene prediction method- Protein Homology (114 aa)    
Predicted Functional Partners:
CN09_19010
Sarcosine oxidase subunit beta; Derived by automated computational analysis using gene prediction method- Protein Homology (386 aa)
 
          0.722
CN09_19015
Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (492 aa)
 
          0.699
CN09_19020
Sarcosine oxidase subunit alpha; Derived by automated computational analysis using gene prediction method- Protein Homology (101 aa)
 
          0.660
CN09_18995
Amino acid transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (269 aa)
              0.618
CN09_19000
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (230 aa)
              0.587
CN09_19005
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (237 aa)
              0.582
CN09_18985
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (74 aa)
              0.521
gcvP
Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family (954 aa)
              0.513
topA
DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA super [...] (888 aa)
   
        0.456
CN09_23555
Ferredoxin; Derived by automated computational analysis using gene prediction method- Protein Homology (972 aa)
              0.451
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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