virD3 protein (Agrobacterium rhizogenes) - STRING interaction network

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Score

virD3

Protein VirD3; Derived by automated computational analysis using gene prediction method: GeneMarkS+ (598 aa)

Predicted Functional Partners:

virD4

0.696

CN09_18560

0.691

virD2

0.556

CN09_19170

0.426

virD1

0.414

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_18560	virD2	CN09_18560	CN09_19185	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology	T-DNA border endonuclease VirD2; Tumor formation by A.tumefaciens involves the transfer and integration of a defined segment (T-DNA) of Ti plasmid DNA into the plant nuclear genome. The virD operon encodes a site- specific endonuclease that cleaves at a unique site within both 24 bp direct repeats flanking the T-DNA	0.999
CN09_18560	virD3	CN09_18560	CN09_19180	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology	Protein VirD3; Derived by automated computational analysis using gene prediction method: GeneMarkS+	0.691
CN09_18560	virD4	CN09_18560	CN09_19175	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology	Coupling protein TraG/VirD4 family; Derived by automated computational analysis using gene prediction method: Protein Homology	0.999
CN09_19170	virD3	CN09_19170	CN09_19180	VirA/G regulated protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Protein VirD3; Derived by automated computational analysis using gene prediction method: GeneMarkS+	0.426
CN09_19170	virD4	CN09_19170	CN09_19175	VirA/G regulated protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Coupling protein TraG/VirD4 family; Derived by automated computational analysis using gene prediction method: Protein Homology	0.558
virD1	virD2	CN09_19190	CN09_19185	T-DNA border endonuclease VirD1; Tumor formation by A.tumefaciens involves the transfer and integration of a defined segment (T-DNA) of Ti plasmid DNA into the plant nuclear genome. The virD operon encodes a site- specific endonuclease that cleaves at a unique site within both 24 bp direct repeats flanking the T-DNA	T-DNA border endonuclease VirD2; Tumor formation by A.tumefaciens involves the transfer and integration of a defined segment (T-DNA) of Ti plasmid DNA into the plant nuclear genome. The virD operon encodes a site- specific endonuclease that cleaves at a unique site within both 24 bp direct repeats flanking the T-DNA	0.774
virD1	virD3	CN09_19190	CN09_19180	T-DNA border endonuclease VirD1; Tumor formation by A.tumefaciens involves the transfer and integration of a defined segment (T-DNA) of Ti plasmid DNA into the plant nuclear genome. The virD operon encodes a site- specific endonuclease that cleaves at a unique site within both 24 bp direct repeats flanking the T-DNA	Protein VirD3; Derived by automated computational analysis using gene prediction method: GeneMarkS+	0.414
virD2	CN09_18560	CN09_19185	CN09_18560	T-DNA border endonuclease VirD2; Tumor formation by A.tumefaciens involves the transfer and integration of a defined segment (T-DNA) of Ti plasmid DNA into the plant nuclear genome. The virD operon encodes a site- specific endonuclease that cleaves at a unique site within both 24 bp direct repeats flanking the T-DNA	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.999
virD2	virD1	CN09_19185	CN09_19190	T-DNA border endonuclease VirD2; Tumor formation by A.tumefaciens involves the transfer and integration of a defined segment (T-DNA) of Ti plasmid DNA into the plant nuclear genome. The virD operon encodes a site- specific endonuclease that cleaves at a unique site within both 24 bp direct repeats flanking the T-DNA	T-DNA border endonuclease VirD1; Tumor formation by A.tumefaciens involves the transfer and integration of a defined segment (T-DNA) of Ti plasmid DNA into the plant nuclear genome. The virD operon encodes a site- specific endonuclease that cleaves at a unique site within both 24 bp direct repeats flanking the T-DNA	0.774
virD2	virD3	CN09_19185	CN09_19180	T-DNA border endonuclease VirD2; Tumor formation by A.tumefaciens involves the transfer and integration of a defined segment (T-DNA) of Ti plasmid DNA into the plant nuclear genome. The virD operon encodes a site- specific endonuclease that cleaves at a unique site within both 24 bp direct repeats flanking the T-DNA	Protein VirD3; Derived by automated computational analysis using gene prediction method: GeneMarkS+	0.556
virD2	virD4	CN09_19185	CN09_19175	T-DNA border endonuclease VirD2; Tumor formation by A.tumefaciens involves the transfer and integration of a defined segment (T-DNA) of Ti plasmid DNA into the plant nuclear genome. The virD operon encodes a site- specific endonuclease that cleaves at a unique site within both 24 bp direct repeats flanking the T-DNA	Coupling protein TraG/VirD4 family; Derived by automated computational analysis using gene prediction method: Protein Homology	0.938
virD3	CN09_18560	CN09_19180	CN09_18560	Protein VirD3; Derived by automated computational analysis using gene prediction method: GeneMarkS+	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.691
virD3	CN09_19170	CN09_19180	CN09_19170	Protein VirD3; Derived by automated computational analysis using gene prediction method: GeneMarkS+	VirA/G regulated protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.426
virD3	virD1	CN09_19180	CN09_19190	Protein VirD3; Derived by automated computational analysis using gene prediction method: GeneMarkS+	T-DNA border endonuclease VirD1; Tumor formation by A.tumefaciens involves the transfer and integration of a defined segment (T-DNA) of Ti plasmid DNA into the plant nuclear genome. The virD operon encodes a site- specific endonuclease that cleaves at a unique site within both 24 bp direct repeats flanking the T-DNA	0.414
virD3	virD2	CN09_19180	CN09_19185	Protein VirD3; Derived by automated computational analysis using gene prediction method: GeneMarkS+	T-DNA border endonuclease VirD2; Tumor formation by A.tumefaciens involves the transfer and integration of a defined segment (T-DNA) of Ti plasmid DNA into the plant nuclear genome. The virD operon encodes a site- specific endonuclease that cleaves at a unique site within both 24 bp direct repeats flanking the T-DNA	0.556
virD3	virD4	CN09_19180	CN09_19175	Protein VirD3; Derived by automated computational analysis using gene prediction method: GeneMarkS+	Coupling protein TraG/VirD4 family; Derived by automated computational analysis using gene prediction method: Protein Homology	0.696
virD4	CN09_18560	CN09_19175	CN09_18560	Coupling protein TraG/VirD4 family; Derived by automated computational analysis using gene prediction method: Protein Homology	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.999
virD4	CN09_19170	CN09_19175	CN09_19170	Coupling protein TraG/VirD4 family; Derived by automated computational analysis using gene prediction method: Protein Homology	VirA/G regulated protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.558
virD4	virD2	CN09_19175	CN09_19185	Coupling protein TraG/VirD4 family; Derived by automated computational analysis using gene prediction method: Protein Homology	T-DNA border endonuclease VirD2; Tumor formation by A.tumefaciens involves the transfer and integration of a defined segment (T-DNA) of Ti plasmid DNA into the plant nuclear genome. The virD operon encodes a site- specific endonuclease that cleaves at a unique site within both 24 bp direct repeats flanking the T-DNA	0.938
virD4	virD3	CN09_19175	CN09_19180	Coupling protein TraG/VirD4 family; Derived by automated computational analysis using gene prediction method: Protein Homology	Protein VirD3; Derived by automated computational analysis using gene prediction method: GeneMarkS+	0.696

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