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virD2 protein (Agrobacterium rhizogenes) - STRING interaction network
"virD2" - T-DNA border endonuclease VirD2 in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
virD2T-DNA border endonuclease VirD2; Tumor formation by A.tumefaciens involves the transfer and integration of a defined segment (T-DNA) of Ti plasmid DNA into the plant nuclear genome. The virD operon encodes a site- specific endonuclease that cleaves at a unique site within both 24 bp direct repeats flanking the T-DNA (436 aa)    
Predicted Functional Partners:
CN09_18560
Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (1702 aa)
 
          0.999
virD4
Coupling protein TraG/VirD4 family; Derived by automated computational analysis using gene prediction method- Protein Homology (671 aa)
 
     
  0.938
virC1
Protein virC1; Derived by automated computational analysis using gene prediction method- Protein Homology (231 aa)
 
     
  0.863
CN09_19250
Type IV secretion system pilin subunit VirB2; Derived by automated computational analysis using gene prediction method- Protein Homology (121 aa)
 
     
  0.788
virD1
T-DNA border endonuclease VirD1; Tumor formation by A.tumefaciens involves the transfer and integration of a defined segment (T-DNA) of Ti plasmid DNA into the plant nuclear genome. The virD operon encodes a site- specific endonuclease that cleaves at a unique site within both 24 bp direct repeats flanking the T-DNA (147 aa)
              0.774
CN09_19225
Type IV secretion system protein VirB8; Derived by automated computational analysis using gene prediction method- Protein Homology (237 aa)
 
          0.770
CN09_19230
Type IV secretion system protein VirB6; Derived by automated computational analysis using gene prediction method- Protein Homology (295 aa)
 
          0.753
CN09_19255
Lytic transglycosylase; Derived by automated computational analysis using gene prediction method- Protein Homology (245 aa)
 
     
  0.749
CN09_19220
Type IV secretion system protein VirB9; Derived by automated computational analysis using gene prediction method- Protein Homology (293 aa)
 
          0.730
CN09_19215
Type IV secretion system protein VirB10; Derived by automated computational analysis using gene prediction method- Protein Homology (375 aa)
 
     
  0.704
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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