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virD1 protein (Agrobacterium rhizogenes) - STRING interaction network
"virD1" - T-DNA border endonuclease VirD1 in Agrobacterium rhizogenes
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
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[Homology]
Score
virD1T-DNA border endonuclease VirD1; Tumor formation by A.tumefaciens involves the transfer and integration of a defined segment (T-DNA) of Ti plasmid DNA into the plant nuclear genome. The virD operon encodes a site- specific endonuclease that cleaves at a unique site within both 24 bp direct repeats flanking the T-DNA (147 aa)    
Predicted Functional Partners:
virD2
T-DNA border endonuclease VirD2; Tumor formation by A.tumefaciens involves the transfer and integration of a defined segment (T-DNA) of Ti plasmid DNA into the plant nuclear genome. The virD operon encodes a site- specific endonuclease that cleaves at a unique site within both 24 bp direct repeats flanking the T-DNA (436 aa)
              0.774
virC2
Protein virC2; Derived by automated computational analysis using gene prediction method- Protein Homology (202 aa)
              0.440
virC1
Protein virC1; Derived by automated computational analysis using gene prediction method- Protein Homology (231 aa)
              0.440
virD3
Protein VirD3; Derived by automated computational analysis using gene prediction method- GeneMarkS+ (598 aa)
              0.414
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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