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virG protein (Agrobacterium rhizogenes) - STRING interaction network
"virG" - Regulatory protein VirG in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
virGRegulatory protein VirG; VirG is required for the positive regulation of at least two vir loci encoded by the Ri plasmid of A.rhizogenes (241 aa)    
Predicted Functional Partners:
virA
Limited host range VirA protein; Derived by automated computational analysis using gene prediction method- Protein Homology (829 aa)
 
     
  0.794
CN09_24910
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (470 aa)
 
 
  0.688
CN09_15420
Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method- Protein Homology (763 aa)
   
 
  0.685
CN09_32975
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (440 aa)
 
  0.678
CN09_23210
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (460 aa)
 
 
  0.661
CN09_01535
Cytochrome C peroxidase; Derived by automated computational analysis using gene prediction method- Protein Homology (461 aa)
         
  0.655
CN09_33125
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (395 aa)
 
 
  0.650
CN09_33980
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (451 aa)
 
 
  0.603
CN09_19210
Type IV secretion system protein VirB11; ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology (344 aa)
 
     
  0.592
CN09_15095
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (408 aa)
 
 
  0.589
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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