virA protein (Agrobacterium rhizogenes) - STRING interaction network

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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protein homology

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[Homology]

Score

virA

Limited host range VirA protein; Derived by automated computational analysis using gene prediction method: Protein Homology (829 aa)

Predicted Functional Partners:

virG

0.794

tzs

0.587

CN09_19230

0.574

CN09_09860

0.540

CN09_27490

0.525

CN09_19250

0.524

pleD

0.507

CN09_03650

0.461

CN09_07740

0.429

CN09_15420

0.428

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_03650	CN09_15420	CN09_03650	CN09_15420	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology	0.999
CN09_03650	CN09_27490	CN09_03650	CN09_27490	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.563
CN09_03650	pleD	CN09_03650	CN09_09855	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	Response regulator PleD; Involved in swarmer-to-stalked cell differentiation in Caulobacter crescentus; catalyzes the condensation of two GTP molecules to form the secondary messenger cyclic di-GMP (c-di-GMP); upon phosphorylation of domain D1 the protein dimerizes; presumably this allows the two GTP-bound GGDEF (diguanylate cyclase) domains to catalyze the condensation reaction; allosterically inhibited by c-di-GMP; Derived by automated computational analysis using gene prediction method: Protein Homology	0.999
CN09_03650	virA	CN09_03650	CN09_19275	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	Limited host range VirA protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.461
CN09_03650	virG	CN09_03650	CN09_19205	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	Regulatory protein VirG; VirG is required for the positive regulation of at least two vir loci encoded by the Ri plasmid of A.rhizogenes	0.576
CN09_07740	CN09_15420	CN09_07740	CN09_15420	ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology	0.663
CN09_07740	pleD	CN09_07740	CN09_09855	ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology	Response regulator PleD; Involved in swarmer-to-stalked cell differentiation in Caulobacter crescentus; catalyzes the condensation of two GTP molecules to form the secondary messenger cyclic di-GMP (c-di-GMP); upon phosphorylation of domain D1 the protein dimerizes; presumably this allows the two GTP-bound GGDEF (diguanylate cyclase) domains to catalyze the condensation reaction; allosterically inhibited by c-di-GMP; Derived by automated computational analysis using gene prediction method: Protein Homology	0.408
CN09_07740	virA	CN09_07740	CN09_19275	ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology	Limited host range VirA protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.429
CN09_09860	CN09_15420	CN09_09860	CN09_15420	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology	0.788
CN09_09860	CN09_27490	CN09_09860	CN09_27490	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.731
CN09_09860	pleD	CN09_09860	CN09_09855	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology	Response regulator PleD; Involved in swarmer-to-stalked cell differentiation in Caulobacter crescentus; catalyzes the condensation of two GTP molecules to form the secondary messenger cyclic di-GMP (c-di-GMP); upon phosphorylation of domain D1 the protein dimerizes; presumably this allows the two GTP-bound GGDEF (diguanylate cyclase) domains to catalyze the condensation reaction; allosterically inhibited by c-di-GMP; Derived by automated computational analysis using gene prediction method: Protein Homology	0.961
CN09_09860	virA	CN09_09860	CN09_19275	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology	Limited host range VirA protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.540
CN09_15420	CN09_03650	CN09_15420	CN09_03650	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.999
CN09_15420	CN09_07740	CN09_15420	CN09_07740	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology	ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology	0.663
CN09_15420	CN09_09860	CN09_15420	CN09_09860	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology	0.788
CN09_15420	CN09_27490	CN09_15420	CN09_27490	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.663
CN09_15420	pleD	CN09_15420	CN09_09855	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology	Response regulator PleD; Involved in swarmer-to-stalked cell differentiation in Caulobacter crescentus; catalyzes the condensation of two GTP molecules to form the secondary messenger cyclic di-GMP (c-di-GMP); upon phosphorylation of domain D1 the protein dimerizes; presumably this allows the two GTP-bound GGDEF (diguanylate cyclase) domains to catalyze the condensation reaction; allosterically inhibited by c-di-GMP; Derived by automated computational analysis using gene prediction method: Protein Homology	0.999
CN09_15420	virA	CN09_15420	CN09_19275	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology	Limited host range VirA protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.428
CN09_15420	virG	CN09_15420	CN09_19205	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology	Regulatory protein VirG; VirG is required for the positive regulation of at least two vir loci encoded by the Ri plasmid of A.rhizogenes	0.685
CN09_19230	CN09_19250	CN09_19230	CN09_19250	Type IV secretion system protein VirB6; Derived by automated computational analysis using gene prediction method: Protein Homology	Type IV secretion system pilin subunit VirB2; Derived by automated computational analysis using gene prediction method: Protein Homology	0.921

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