STRINGSTRING
CN09_19310 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_19310" - Transposase in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_19310Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology (540 aa)    
Predicted Functional Partners:
CN09_19305
Isocitrate lyase; Derived by automated computational analysis using gene prediction method- Protein Homology (115 aa)
     
  0.935
CN09_19300
Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology (120 aa)
 
     
  0.906
CN09_34545
Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology (117 aa)
     
  0.862
CN09_01860
D-arabinose 5-phosphate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the SIS family. GutQ/KpsF subfamily (331 aa)
              0.830
CN09_15290
Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology (1225 aa)
     
 
  0.746
CN09_34550
Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology (128 aa)
 
     
  0.733
CN09_25960
DNA polymerase; Derived by automated computational analysis using gene prediction method- Protein Homology (419 aa)
 
     
  0.702
CN09_22625
Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology (226 aa)
 
     
  0.683
CN09_19270
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (204 aa)
     
  0.680
CN09_12885
Transposase; Derived by automated computational analysis using gene prediction method- Protein Homology (244 aa)
 
          0.673
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (9%) [HD]