CN09_19360 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

CN09_19360

Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (119 aa)

Predicted Functional Partners:

CN09_18560

0.777

CN09_19355

0.587

CN09_01140

0.563

CN09_01135

0.558

virD4

0.543

CN09_19255

0.501

CN09_19630

0.492

CN09_33825

0.491

CN09_33805

0.477

CN09_33720

0.469

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_01135	CN09_01140	CN09_01135	CN09_01140	Cell division protein Fic; Derived by automated computational analysis using gene prediction method- Protein Homology	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.989
CN09_01135	CN09_18560	CN09_01135	CN09_18560	Cell division protein Fic; Derived by automated computational analysis using gene prediction method- Protein Homology	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.866
CN09_01135	CN09_19360	CN09_01135	CN09_19360	Cell division protein Fic; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.558
CN09_01135	CN09_33720	CN09_01135	CN09_33720	Cell division protein Fic; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.437
CN09_01140	CN09_01135	CN09_01140	CN09_01135	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Cell division protein Fic; Derived by automated computational analysis using gene prediction method- Protein Homology	0.989
CN09_01140	CN09_19360	CN09_01140	CN09_19360	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.563
CN09_18560	CN09_01135	CN09_18560	CN09_01135	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Cell division protein Fic; Derived by automated computational analysis using gene prediction method- Protein Homology	0.866
CN09_18560	CN09_19255	CN09_18560	CN09_19255	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Lytic transglycosylase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.867
CN09_18560	CN09_19360	CN09_18560	CN09_19360	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.777
CN09_18560	CN09_19630	CN09_18560	CN09_19630	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	ArdC antirestriction protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_18560	CN09_33720	CN09_18560	CN09_33720	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.895
CN09_18560	CN09_33805	CN09_18560	CN09_33805	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.895
CN09_18560	CN09_33825	CN09_18560	CN09_33825	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	ArdC antirestriction protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_18560	virD4	CN09_18560	CN09_19175	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Coupling protein TraG/VirD4 family; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_19255	CN09_18560	CN09_19255	CN09_18560	Lytic transglycosylase; Derived by automated computational analysis using gene prediction method- Protein Homology	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.867
CN09_19255	CN09_19360	CN09_19255	CN09_19360	Lytic transglycosylase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.501
CN09_19255	CN09_19630	CN09_19255	CN09_19630	Lytic transglycosylase; Derived by automated computational analysis using gene prediction method- Protein Homology	ArdC antirestriction protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.525
CN09_19255	CN09_33825	CN09_19255	CN09_33825	Lytic transglycosylase; Derived by automated computational analysis using gene prediction method- Protein Homology	ArdC antirestriction protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.526
CN09_19255	virD4	CN09_19255	CN09_19175	Lytic transglycosylase; Derived by automated computational analysis using gene prediction method- Protein Homology	Coupling protein TraG/VirD4 family; Derived by automated computational analysis using gene prediction method- Protein Homology	0.957
CN09_19355	CN09_19360	CN09_19355	CN09_19360	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.587

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