CN09_19375 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_19375

Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family (391 aa)

Predicted Functional Partners:

CN09_19380

0.738

CN09_22965

0.651

CN09_11565

0.624

CN09_17085

0.561

CN09_00755

0.485

CN09_00760

0.484

CN09_26165

0.474

CN09_26160

0.467

CN09_00765

0.449

CN09_00770

0.446

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

page 1 of 4

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_00755	CN09_00760	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.647
CN09_00755	CN09_00765	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.689
CN09_00755	CN09_00770	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family	0.629
CN09_00755	CN09_19375	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family	0.485
CN09_00755	CN09_19380	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family	0.525
CN09_00755	CN09_26165	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Glucosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.483
CN09_00760	CN09_00755	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.647
CN09_00760	CN09_00765	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.911
CN09_00760	CN09_00770	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family	0.994
CN09_00760	CN09_19375	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family	0.484
CN09_00760	CN09_19380	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family	0.540
CN09_00760	CN09_26160	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Vicibactin biosynthesis non-ribosomal peptide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family	0.956
CN09_00760	CN09_26165	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Glucosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.447
CN09_00765	CN09_00755	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.689
CN09_00765	CN09_00760	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.911
CN09_00765	CN09_00770	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family	0.992
CN09_00765	CN09_19375	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family	0.449
CN09_00765	CN09_19380	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family	0.518
CN09_00765	CN09_26165	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Glucosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.456
CN09_00770	CN09_00755	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.629