STRINGSTRING
repC protein (Agrobacterium rhizogenes) - STRING interaction network
"repC" - Putative replication protein C in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
repCPutative replication protein C; This protein is coded by a hairy root Ri plasmid, it is probably involved in its replication (404 aa)    
Predicted Functional Partners:
repA
Putative replication protein A; This protein is coded by a hairy root Ri plasmid. It is possibly involved in regulating the plasmid copy-number (404 aa)
 
     
  0.903
repB
Putative replication protein B; This protein is coded by a hairy root Ri plasmid, it is probably involved in its replication (340 aa)
 
     
  0.886
CN09_33640
Chromosome partitioning protein ParA; Derived by automated computational analysis using gene prediction method- Protein Homology (398 aa)
 
     
  0.806
CN09_33630
Replication protein RepB; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ParB family (319 aa)
 
     
  0.777
CN09_19470
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (147 aa)
          0.717
CN09_22415
Plasmid partitioning protein ParA; Derived by automated computational analysis using gene prediction method- Protein Homology (391 aa)
 
     
  0.694
CN09_00535
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (83 aa)
 
          0.675
CN09_33780
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (98 aa)
 
          0.668
CN09_19475
Plasmid pRiA4b replicator region (hairy-root-inducing plasmid); Derived by automated computational analysis using gene prediction method- GeneMarkS+ (87 aa)
            0.666
CN09_19450
Integrase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ’phage’ integrase family (362 aa)
 
   
  0.657
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (8%) [HD]