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repB protein (Agrobacterium rhizogenes) - STRING interaction network
"repB" - Putative replication protein B in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
repBPutative replication protein B; This protein is coded by a hairy root Ri plasmid, it is probably involved in its replication (340 aa)    
Predicted Functional Partners:
repA
Putative replication protein A; This protein is coded by a hairy root Ri plasmid. It is possibly involved in regulating the plasmid copy-number (404 aa)
 
 
  0.973
CN09_18560
Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (1702 aa)
 
   
  0.967
repC
Putative replication protein C; This protein is coded by a hairy root Ri plasmid, it is probably involved in its replication (404 aa)
 
     
  0.886
CN09_33640
Chromosome partitioning protein ParA; Derived by automated computational analysis using gene prediction method- Protein Homology (398 aa)
 
 
  0.807
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (1000 aa)
   
   
  0.801
CN09_22415
Plasmid partitioning protein ParA; Derived by automated computational analysis using gene prediction method- Protein Homology (391 aa)
 
 
  0.765
CN09_33625
Replication initiation protein RepC; Derived by automated computational analysis using gene prediction method- Protein Homology (405 aa)
 
     
  0.748
CN09_22425
Replication initiation protein RepC; Derived by automated computational analysis using gene prediction method- Protein Homology (407 aa)
 
     
  0.740
topA
DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA super [...] (888 aa)
   
   
  0.647
CN09_15290
Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology (1225 aa)
   
 
  0.610
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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