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CN09_19630 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_19630" - ArdC antirestriction protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Databases
Textmining
[Homology]
Score
CN09_19630ArdC antirestriction protein; Derived by automated computational analysis using gene prediction method- Protein Homology (309 aa)    
Predicted Functional Partners:
CN09_18560
Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (1702 aa)
 
          0.999
CN09_19645
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (195 aa)
 
          0.804
CN09_15290
Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology (1225 aa)
              0.774
CN09_00525
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (103 aa)
 
          0.726
KEA07812.1
Derived by automated computational analysis using gene prediction method- Protein Homology (103 aa)
 
          0.726
virD4
Coupling protein TraG/VirD4 family; Derived by automated computational analysis using gene prediction method- Protein Homology (671 aa)
 
        0.725
CN09_33810
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (102 aa)
 
          0.720
CN09_33800
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (102 aa)
 
          0.720
CN09_33830
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (195 aa)
 
          0.720
CN09_33850
Plasmid partitioning protein; ParB family; Derived by automated computational analysis using gene prediction method- Protein Homology (584 aa)
 
   
  0.714
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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