STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_19635annotation not available (134 aa)    
Predicted Functional Partners:
CN09_19640
Rv0623-like transcription factor; Derived by automated computational analysis using gene prediction method: Protein Homology
   
 
 0.901
CN09_10250
Histidinol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
 
 0.673
CN09_19645
Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.664
CN09_12715
VirB1 type IV secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.611
virB5
P-type DNA transfer protein VirB5; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.576
CN09_12685
Conjugal transfer protein TrbL; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.571
CN09_12705
Type IV secretion protein VirB3; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.526
CN09_19230
Type IV secretion system protein VirB6; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.521
CN09_02600
Dienelactone hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.518
CN09_12710
Type IV secretory pathway AvhB2 protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.515
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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