CN09_19660 protein (Agrobacterium rhizogenes)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

CN09_19660

Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (295 aa)

Predicted Functional Partners:

CN09_18560

0.846

CN09_33845

0.825

CN09_33850

0.815

CN09_19670

0.815

CN09_33830

0.807

CN09_19645

0.807

CN09_18570

0.790

CN09_18575

0.780

CN09_18565

0.722

CN09_19630

0.682

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

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node1	node2	node1 annotation	node2 annotation	score
CN09_18560	CN09_18565	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_18560	CN09_18570	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_18560	CN09_18575	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.878
CN09_18560	CN09_19630	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	ArdC antirestriction protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_18560	CN09_19645	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.800
CN09_18560	CN09_19660	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.846
CN09_18560	CN09_19670	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Plasmid partitioning protein; ParB family; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ParB family	0.990
CN09_18560	CN09_33830	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.800
CN09_18560	CN09_33845	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.937
CN09_18560	CN09_33850	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Plasmid partitioning protein; ParB family; Derived by automated computational analysis using gene prediction method- Protein Homology	0.990
CN09_18565	CN09_18560	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_18565	CN09_18570	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.983
CN09_18565	CN09_18575	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.913
CN09_18565	CN09_19630	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	ArdC antirestriction protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.438
CN09_18565	CN09_19645	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.751
CN09_18565	CN09_19660	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.722
CN09_18565	CN09_19670	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Plasmid partitioning protein; ParB family; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ParB family	0.771
CN09_18565	CN09_33830	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.756
CN09_18565	CN09_33845	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.730
CN09_18565	CN09_33850	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Plasmid partitioning protein; ParB family; Derived by automated computational analysis using gene prediction method- Protein Homology	0.770