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CN09_19760 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_19760" - Cupin in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_19760Cupin; Derived by automated computational analysis using gene prediction method- Protein Homology (139 aa)    
Predicted Functional Partners:
CN09_19755
NmrA family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (250 aa)
 
          0.972
CN09_19750
Beta-lactamase; Derived by automated computational analysis using gene prediction method- Protein Homology (312 aa)
 
          0.772
CN09_19745
Alkyl hydroperoxide reductase AhpD; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity (151 aa)
         
  0.666
CN09_19825
Mechanosensitive ion channel protein; Derived by automated computational analysis using gene prediction method- Protein Homology (503 aa)
 
     
  0.657
CN09_00715
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (506 aa)
 
     
  0.593
CN09_22405
Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (346 aa)
 
          0.580
CN09_19725
ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology (1199 aa)
 
          0.511
CN09_01405
MFS transporter; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the major facilitator superfamily (535 aa)
              0.505
CN09_06430
Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (293 aa)
 
          0.437
CN09_21975
Adenylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology (736 aa)
 
          0.403
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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