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CN09_19850 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_19850" - Transcriptional regulator in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Textmining
[Homology]
Score
CN09_19850Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (311 aa)    
Predicted Functional Partners:
CN09_14830
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (275 aa)
 
     
  0.638
CN09_19855
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (330 aa)
 
     
  0.584
CN09_01390
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (279 aa)
 
 
 
  0.572
CN09_18530
Cupin; Derived by automated computational analysis using gene prediction method- Protein Homology (328 aa)
   
          0.563
CN09_19845
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (306 aa)
              0.539
CN09_06545
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (283 aa)
 
     
  0.518
CN09_18455
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (292 aa)
   
          0.505
CN09_25015
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (330 aa)
 
 
 
  0.497
CN09_30785
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (299 aa)
 
 
 
  0.492
CN09_32425
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (312 aa)
   
          0.448
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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