CN09_19915 protein (Agrobacterium rhizogenes)

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CN09_19915

Transmembrane transcriptional regulator (Anti-sigma factor); Derived by automated computational analysis using gene prediction method: Protein Homology (256 aa)

Predicted Functional Partners:

CN09_19910

0.981

polA

0.879

CN09_19920

0.846

CN09_33210

0.728

CN09_19905

0.658

CN09_04700

0.582

CN09_07390

0.566

CN09_10155

0.531

CN09_03235

0.516

CN09_23925

0.486

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_03235	CN09_19915	CN09_03235	CN09_19915	Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily	Transmembrane transcriptional regulator (Anti-sigma factor); Derived by automated computational analysis using gene prediction method: Protein Homology	0.516
CN09_03235	polA	CN09_03235	CN09_13050	Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity	0.424
CN09_04700	CN09_07390	CN09_04700	CN09_07390	Sugar phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.542
CN09_04700	CN09_19915	CN09_04700	CN09_19915	Sugar phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology	Transmembrane transcriptional regulator (Anti-sigma factor); Derived by automated computational analysis using gene prediction method: Protein Homology	0.582
CN09_04700	CN09_23925	CN09_04700	CN09_23925	Sugar phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.570
CN09_07390	CN09_04700	CN09_07390	CN09_04700	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology	Sugar phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.542
CN09_07390	CN09_19915	CN09_07390	CN09_19915	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology	Transmembrane transcriptional regulator (Anti-sigma factor); Derived by automated computational analysis using gene prediction method: Protein Homology	0.566
CN09_07390	CN09_23925	CN09_07390	CN09_23925	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.416
CN09_10155	CN09_19915	CN09_10155	CN09_19915	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Transmembrane transcriptional regulator (Anti-sigma factor); Derived by automated computational analysis using gene prediction method: Protein Homology	0.531
CN09_19905	CN09_19910	CN09_19905	CN09_19910	Bestrophin; Derived by automated computational analysis using gene prediction method: Protein Homology	Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; possibly involved in prevention of copper toxicity; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily	0.658
CN09_19905	CN09_19915	CN09_19905	CN09_19915	Bestrophin; Derived by automated computational analysis using gene prediction method: Protein Homology	Transmembrane transcriptional regulator (Anti-sigma factor); Derived by automated computational analysis using gene prediction method: Protein Homology	0.658
CN09_19905	CN09_19920	CN09_19905	CN09_19920	Bestrophin; Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the BI1 family	0.607
CN09_19910	CN09_19905	CN09_19910	CN09_19905	Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; possibly involved in prevention of copper toxicity; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily	Bestrophin; Derived by automated computational analysis using gene prediction method: Protein Homology	0.658
CN09_19910	CN09_19915	CN09_19910	CN09_19915	Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; possibly involved in prevention of copper toxicity; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily	Transmembrane transcriptional regulator (Anti-sigma factor); Derived by automated computational analysis using gene prediction method: Protein Homology	0.981
CN09_19910	CN09_19920	CN09_19910	CN09_19920	Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; possibly involved in prevention of copper toxicity; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the BI1 family	0.828
CN09_19910	polA	CN09_19910	CN09_13050	Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; possibly involved in prevention of copper toxicity; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity	0.423
CN09_19915	CN09_03235	CN09_19915	CN09_03235	Transmembrane transcriptional regulator (Anti-sigma factor); Derived by automated computational analysis using gene prediction method: Protein Homology	Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily	0.516
CN09_19915	CN09_04700	CN09_19915	CN09_04700	Transmembrane transcriptional regulator (Anti-sigma factor); Derived by automated computational analysis using gene prediction method: Protein Homology	Sugar phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.582
CN09_19915	CN09_07390	CN09_19915	CN09_07390	Transmembrane transcriptional regulator (Anti-sigma factor); Derived by automated computational analysis using gene prediction method: Protein Homology	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.566
CN09_19915	CN09_10155	CN09_19915	CN09_10155	Transmembrane transcriptional regulator (Anti-sigma factor); Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.531

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