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CN09_20070 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_20070" - UPF0229 protein CN09_20070 in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_20070UPF0229 protein CN09_20070; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the UPF0229 family (422 aa)    
Predicted Functional Partners:
CN09_20075
SpoVR family protein; Derived by automated computational analysis using gene prediction method- Protein Homology (515 aa)
 
 
  0.998
CN09_20065
Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (648 aa)
 
   
  0.998
CN09_01135
Cell division protein Fic; Derived by automated computational analysis using gene prediction method- Protein Homology (198 aa)
     
        0.772
CN09_02135
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (62 aa)
     
        0.771
CN09_10865
Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method- Protein Homology (668 aa)
     
        0.519
nnrD
Multifunctional fusion protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration; Belongs to the NnrD/CARKD family (491 aa)
              0.451
CN09_17565
Mannose-1-phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (243 aa)
         
  0.425
CN09_31785
Isochorismatase; Derived by automated computational analysis using gene prediction method- Protein Homology (196 aa)
   
        0.416
CN09_18480
Amidohydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (220 aa)
   
        0.416
apaG
Protein ApaG; Derived by automated computational analysis using gene prediction method- Protein Homology (130 aa)
              0.414
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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