STRINGSTRING
CN09_20110 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_20110" - Transcriptional regulator in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_20110Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (219 aa)    
Predicted Functional Partners:
CN09_20105
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (446 aa)
 
  0.973
CN09_28690
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (459 aa)
 
  0.817
CN09_33125
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (395 aa)
 
 
  0.723
CN09_28800
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (471 aa)
 
 
  0.690
CN09_15420
Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method- Protein Homology (763 aa)
   
 
  0.685
CN09_33980
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (451 aa)
 
 
  0.651
CN09_03650
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (1086 aa)
 
  0.642
CN09_20100
N-acetylglucosamine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (308 aa)
         
  0.640
CN09_15095
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (408 aa)
 
  0.622
cutC
Copper homeostasis protein CutC; Participates in the control of copper homeostasis (236 aa)
         
  0.609
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (6%) [HD]