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CN09_20125 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_20125" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_20125Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+ (134 aa)    
Predicted Functional Partners:
CN09_29715
Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (298 aa)
 
          0.974
KEA03743.1
Derived by automated computational analysis using gene prediction method- Protein Homology (298 aa)
 
          0.974
CN09_29725
Mannitol ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (280 aa)
 
 
 
  0.859
CN09_20120
DeoR faimly transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (317 aa)
 
          0.858
CN09_34615
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (290 aa)
 
  0.845
CN09_29710
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (290 aa)
 
  0.845
CN09_32435
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+ (109 aa)
 
 
 
  0.761
CN09_01160
Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the mannitol dehydrogenase family (493 aa)
 
     
  0.710
CN09_15005
Carbohydrate kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (308 aa)
 
     
  0.561
CN09_32430
Converts D-sorbitol to L-sorbose; Derived by automated computational analysis using gene prediction method- Protein Homology (257 aa)
 
          0.544
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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