CN09_20160 protein (Agrobacterium rhizogenes)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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filled nodes:
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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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textmining

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protein homology

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[Homology]

Score

CN09_20160

Cytochrome C oxidase subunit I; Derived by automated computational analysis using gene prediction method- Protein Homology (271 aa)

Predicted Functional Partners:

polA

0.974

CN09_20165

0.587

CN09_20175

0.548

CN09_20185

0.480

CN09_20195

0.471

CN09_20190

0.450

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_20160	CN09_20165	CN09_20160	CN09_20165	Cytochrome C oxidase subunit I; Derived by automated computational analysis using gene prediction method- Protein Homology	Cytochrome C transmembrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.587
CN09_20160	CN09_20175	CN09_20160	CN09_20175	Cytochrome C oxidase subunit I; Derived by automated computational analysis using gene prediction method- Protein Homology	Cytochrome C oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.548
CN09_20160	CN09_20185	CN09_20160	CN09_20185	Cytochrome C oxidase subunit I; Derived by automated computational analysis using gene prediction method- Protein Homology	Cytochrome C oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.480
CN09_20160	CN09_20190	CN09_20160	CN09_20190	Cytochrome C oxidase subunit I; Derived by automated computational analysis using gene prediction method- Protein Homology	Bb3-type cytochrome oxidase subunit IV; Derived by automated computational analysis using gene prediction method- Protein Homology	0.450
CN09_20160	CN09_20195	CN09_20160	CN09_20195	Cytochrome C oxidase subunit I; Derived by automated computational analysis using gene prediction method- Protein Homology	Cytochrome C oxidase subunit IV; Derived by automated computational analysis using gene prediction method- Protein Homology	0.471
CN09_20160	polA	CN09_20160	CN09_13050	Cytochrome C oxidase subunit I; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity	0.974
CN09_20165	CN09_20160	CN09_20165	CN09_20160	Cytochrome C transmembrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Cytochrome C oxidase subunit I; Derived by automated computational analysis using gene prediction method- Protein Homology	0.587
CN09_20165	CN09_20175	CN09_20165	CN09_20175	Cytochrome C transmembrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Cytochrome C oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.706
CN09_20165	CN09_20185	CN09_20165	CN09_20185	Cytochrome C transmembrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Cytochrome C oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.669
CN09_20165	CN09_20190	CN09_20165	CN09_20190	Cytochrome C transmembrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Bb3-type cytochrome oxidase subunit IV; Derived by automated computational analysis using gene prediction method- Protein Homology	0.611
CN09_20165	CN09_20195	CN09_20165	CN09_20195	Cytochrome C transmembrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Cytochrome C oxidase subunit IV; Derived by automated computational analysis using gene prediction method- Protein Homology	0.702
CN09_20175	CN09_20160	CN09_20175	CN09_20160	Cytochrome C oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology	Cytochrome C oxidase subunit I; Derived by automated computational analysis using gene prediction method- Protein Homology	0.548
CN09_20175	CN09_20165	CN09_20175	CN09_20165	Cytochrome C oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology	Cytochrome C transmembrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.706
CN09_20175	CN09_20185	CN09_20175	CN09_20185	Cytochrome C oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology	Cytochrome C oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.996
CN09_20175	CN09_20190	CN09_20175	CN09_20190	Cytochrome C oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology	Bb3-type cytochrome oxidase subunit IV; Derived by automated computational analysis using gene prediction method- Protein Homology	0.995
CN09_20175	CN09_20195	CN09_20175	CN09_20195	Cytochrome C oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology	Cytochrome C oxidase subunit IV; Derived by automated computational analysis using gene prediction method- Protein Homology	0.976
CN09_20185	CN09_20160	CN09_20185	CN09_20160	Cytochrome C oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology	Cytochrome C oxidase subunit I; Derived by automated computational analysis using gene prediction method- Protein Homology	0.480
CN09_20185	CN09_20165	CN09_20185	CN09_20165	Cytochrome C oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology	Cytochrome C transmembrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.669
CN09_20185	CN09_20175	CN09_20185	CN09_20175	Cytochrome C oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology	Cytochrome C oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.996
CN09_20185	CN09_20190	CN09_20185	CN09_20190	Cytochrome C oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology	Bb3-type cytochrome oxidase subunit IV; Derived by automated computational analysis using gene prediction method- Protein Homology	0.974

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