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CN09_20220 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_20220" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_20220Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (139 aa)    
Predicted Functional Partners:
CN09_24460
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (249 aa)
   
          0.691
CN09_25635
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (216 aa)
   
          0.688
CN09_25615
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (157 aa)
   
          0.654
CN09_24555
1,3-beta-glucanase; Derived by automated computational analysis using gene prediction method- Protein Homology (310 aa)
   
          0.644
CN09_23740
Exopolysaccharide production repressor exox; Derived by automated computational analysis using gene prediction method- Protein Homology (96 aa)
   
          0.618
CN09_24545
FAD-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (446 aa)
   
          0.614
CN09_24540
Hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (655 aa)
   
          0.613
CN09_11065
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (174 aa)
   
          0.605
CN09_24810
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (595 aa)
   
          0.601
CN09_30430
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (527 aa)
   
          0.588
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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