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CN09_20260 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_20260" - ABC transporter permease in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_20260ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (314 aa)    
Predicted Functional Partners:
CN09_20265
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (293 aa)
 
  0.970
CN09_20275
DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; Derived by automated computational analysis using gene prediction method- Protein Homology (352 aa)
 
 
  0.897
CN09_20270
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (241 aa)
              0.852
CN09_31645
D-ala-D-ala transporter subunit; Derived by automated computational analysis using gene prediction method- Protein Homology (293 aa)
 
  0.806
CN09_26415
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (285 aa)
 
  0.800
CN09_20615
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (276 aa)
 
  0.798
CN09_33460
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (291 aa)
 
  0.795
CN09_30085
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (290 aa)
 
  0.792
CN09_33040
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (291 aa)
 
  0.788
CN09_13565
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (285 aa)
 
  0.782
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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