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CN09_20270 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_20270" - Transcriptional regulator in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_20270Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (241 aa)    
Predicted Functional Partners:
CN09_20265
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (293 aa)
     
      0.861
CN09_20260
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (314 aa)
              0.852
CN09_21675
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (214 aa)
   
          0.781
CN09_31885
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (229 aa)
   
          0.780
CN09_23535
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (215 aa)
   
          0.767
CN09_23530
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (219 aa)
   
          0.754
CN09_00885
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (223 aa)
   
          0.745
CN09_07685
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (204 aa)
   
          0.739
CN09_12750
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (232 aa)
   
          0.737
CN09_20275
DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; Derived by automated computational analysis using gene prediction method- Protein Homology (352 aa)
              0.732
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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