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CN09_20355 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_20355" - Xylose isomerase in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_20355Xylose isomerase; Derived by automated computational analysis using gene prediction method- Protein Homology (317 aa)    
Predicted Functional Partners:
CN09_20380
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (550 aa)
 
          0.783
CN09_20360
Sugar ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (410 aa)
 
          0.745
CN09_34465
Myo-inositol 2-dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (335 aa)
 
   
  0.711
CN09_34460
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the TPP enzyme family (623 aa)
 
     
  0.701
CN09_20350
LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (352 aa)
 
   
  0.681
CN09_03545
Inositol 2-dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (330 aa)
 
   
  0.679
CN09_11585
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the TPP enzyme family (616 aa)
 
     
  0.675
CN09_11590
MocC; Derived by automated computational analysis using gene prediction method- Protein Homology (305 aa)
   
          0.672
CN09_34410
Myo-inositol 2-dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (335 aa)
 
   
  0.630
CN09_11595
5-deoxyglucuronate isomerase; Derived by automated computational analysis using gene prediction method- Protein Homology (265 aa)
 
     
  0.625
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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