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CN09_20430 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_20430" - Transcriptional regulator in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_20430Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (309 aa)    
Predicted Functional Partners:
CN09_20425
Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (410 aa)
 
          0.725
CN09_02265
Lysyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method- Protein Homology (869 aa)
              0.671
pheT
Phenylalanine--tRNA ligase beta subunit; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily (807 aa)
              0.614
CN09_20400
Beta-galactosidase; Derived by automated computational analysis using gene prediction method- Protein Homology (644 aa)
 
          0.598
CN09_20415
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (283 aa)
 
          0.575
CN09_20420
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (302 aa)
 
          0.574
CN09_20410
Alpha-galactosidase; Derived by automated computational analysis using gene prediction method- Protein Homology (696 aa)
 
          0.566
CN09_03415
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (287 aa)
 
 
 
  0.499
CN09_01195
6-O-methylguanine DNA methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (290 aa)
   
 
  0.471
CN09_08370
Acyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (380 aa)
 
          0.461
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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