STRINGSTRING
CN09_20555 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_20555" - Hydantoinase in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Textmining
[Homology]
Score
CN09_20555Hydantoinase; Derived by automated computational analysis using gene prediction method- Protein Homology (699 aa)    
Predicted Functional Partners:
CN09_20560
Methylhydantoinase; Derived by automated computational analysis using gene prediction method- Protein Homology (581 aa)
 
 
  0.991
CN09_30875
Methylhydantoinase; Derived by automated computational analysis using gene prediction method- Protein Homology (564 aa)
 
 
  0.947
CN09_21260
Methylhydantoinase; Derived by automated computational analysis using gene prediction method- Protein Homology (558 aa)
 
 
  0.927
CN09_23950
Methylhydantoinase; Derived by automated computational analysis using gene prediction method- Protein Homology (249 aa)
          0.804
CN09_20545
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (194 aa)
 
          0.739
CN09_20540
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (314 aa)
 
          0.734
CN09_20550
Peptide synthetase; Derived by automated computational analysis using gene prediction method- Protein Homology (194 aa)
 
          0.729
CN09_20565
Acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (393 aa)
              0.697
CN09_20535
6-hydroxynicotinate reductase; Derived by automated computational analysis using gene prediction method- Protein Homology (497 aa)
 
          0.697
CN09_05700
Drug-proton antiporter; Derived by automated computational analysis using gene prediction method- Protein Homology (681 aa)
              0.607
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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