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CN09_20605 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_20605" - ABC transporter substrate-binding protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_20605ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (516 aa)    
Predicted Functional Partners:
CN09_20600
Acetylornithine deacetylase; Derived by automated computational analysis using gene prediction method- Protein Homology (440 aa)
 
     
  0.958
CN09_20610
ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (315 aa)
 
  0.907
CN09_20615
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (276 aa)
   
  0.899
CN09_20625
Acetylornithine deacetylase; Derived by automated computational analysis using gene prediction method- Protein Homology (406 aa)
 
     
  0.885
CN09_20595
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (251 aa)
 
          0.758
CN09_20630
Peptidase; Derived by automated computational analysis using gene prediction method- Protein Homology (373 aa)
 
     
  0.750
CN09_23265
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (326 aa)
 
  0.740
CN09_25325
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (316 aa)
 
  0.709
CN09_23270
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (276 aa)
   
  0.707
CN09_20620
Peptide ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (545 aa)
 
   
  0.706
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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