STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_20650Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology (349 aa)    
Predicted Functional Partners:
CN09_20655
Nodulation protein W; Derived by automated computational analysis using gene prediction method: Protein Homology
   
 0.972
CN09_20660
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+
       0.845
CN09_19720
LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
   
 0.793
CN09_19710
LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
   
 0.736
CN09_20645
Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.678
CN09_20640
Sulfonate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.602
CN09_24230
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology
   
 0.577
pleD
Response regulator PleD; Involved in swarmer-to-stalked cell differentiation in Caulobacter crescentus; catalyzes the condensation of two GTP molecules to form the secondary messenger cyclic di-GMP (c-di-GMP); upon phosphorylation of domain D1 the protein dimerizes; presumably this allows the two GTP-bound GGDEF (diguanylate cyclase) domains to catalyze the condensation reaction; allosterically inhibited by c-di-GMP; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 0.494
CN09_24445
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
   
 0.483
CN09_28795
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
   
 0.473
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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