STRINGSTRING
CN09_20655 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_20655" - Nodulation protein W in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_20655Nodulation protein W; Derived by automated computational analysis using gene prediction method- Protein Homology (202 aa)    
Predicted Functional Partners:
CN09_19725
ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology (1199 aa)
 
     
  0.985
CN09_20650
Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (349 aa)
     
  0.972
CN09_20660
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+ (161 aa)
              0.845
CN09_20645
Nitrate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (443 aa)
              0.677
CN09_20640
Sulfonate ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (586 aa)
              0.582
CN09_15125
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method- Protein Homology (227 aa)
   
     
  0.428
CN09_33985
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (239 aa)
   
     
  0.405
CN09_19715
Regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (125 aa)
 
       
0.404
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (8%) [HD]