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CN09_20720 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_20720" - MFS transporter in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_20720MFS transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (416 aa)    
Predicted Functional Partners:
CN09_06190
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (303 aa)
   
   
  0.999
CN09_00260
Cro/Cl family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (470 aa)
         
  0.738
CN09_06180
Molybdopterin-guanine dinucleotide biosynthesis protein MobB; Derived by automated computational analysis using gene prediction method- Protein Homology (176 aa)
              0.729
CN09_17610
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (253 aa)
         
  0.728
CN09_06925
Methylmalonyl-CoA carboxyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (510 aa)
              0.720
CN09_20725
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+ (212 aa)
         
  0.713
CN09_03470
Major facilitator transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (466 aa)
 
     
  0.636
CN09_14870
MFS transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (473 aa)
   
          0.553
CN09_20715
Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (475 aa)
     
 
  0.492
CN09_20710
Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (362 aa)
     
 
  0.437
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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