STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_20760RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily (196 aa)    
Predicted Functional Partners:
CN09_20765
Acetylase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.778
CN09_23245
Iron dicitrate transport regulator FecR; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
 0.703
CN09_20780
Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
     
 0.665
CN09_30315
Iron dicitrate transport regulator FecR; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
 0.654
CN09_20775
Iron siderophore-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.651
CN09_20770
Iron-hydroxamate transporter ATP-binding subunit; Part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.649
CN09_20745
Siderophore biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.635
CN09_20885
C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.627
CN09_30945
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.610
CN09_23250
RNA polymerase sigma70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily
  
     0.569
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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