STRINGSTRING
CN09_20765 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_20765" - Acetylase in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_20765Acetylase; Derived by automated computational analysis using gene prediction method- Protein Homology (157 aa)    
Predicted Functional Partners:
CN09_20745
Siderophore biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology (382 aa)
 
     
  0.852
CN09_20735
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (393 aa)
 
 
 
  0.831
CN09_20810
Phosphopantetheinyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the P-Pant transferase superfamily (240 aa)
 
     
  0.828
CN09_20780
Iron ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily (661 aa)
              0.791
CN09_20775
Iron siderophore-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (302 aa)
              0.791
CN09_20770
Iron-hydroxamate transporter ATP-binding subunit; Part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (266 aa)
              0.791
CN09_20760
RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily (196 aa)
 
     
  0.778
CN09_20785
Acetoacetyl-CoA reductase; Derived by automated computational analysis using gene prediction method- Protein Homology (241 aa)
              0.599
CN09_20885
C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (172 aa)
 
          0.566
CN09_27690
Acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (197 aa)
 
     
  0.495
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (9%) [HD]