STRINGSTRING
CN09_20890 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_20890" - C4-dicarboxylate ABC transporter in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_20890C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (331 aa)    
Predicted Functional Partners:
CN09_20880
C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (428 aa)
     
  0.988
CN09_20885
C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (172 aa)
 
   
  0.988
CN09_03380
2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (1107 aa)
         
  0.904
CN09_22360
Urea carboxylase; Derived by automated computational analysis using gene prediction method- Protein Homology (1178 aa)
              0.872
CN09_20875
Glutamate-1-semialdehyde aminotransferase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family (410 aa)
              0.856
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (1000 aa)
           
  0.843
CN09_08485
Alanine dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the AlaDH/PNT family (372 aa)
           
  0.832
CN09_32965
Acetyl-COA carboxylase; Derived by automated computational analysis using gene prediction method- Protein Homology (533 aa)
              0.812
CN09_26805
3-keto-5-aminohexanoate cleavage protein; Derived by automated computational analysis using gene prediction method- Protein Homology (629 aa)
              0.788
CN09_10630
C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (191 aa)
 
     
  0.719
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (10%) [HD]