STRINGSTRING
CN09_20895 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_20895" - Transcriptional regulator in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_20895Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (298 aa)    
Predicted Functional Partners:
CN09_31265
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (305 aa)
   
          0.674
CN09_18425
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (304 aa)
   
          0.671
CN09_20885
C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (172 aa)
 
          0.659
CN09_18980
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (302 aa)
   
          0.635
CN09_31460
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (305 aa)
   
          0.591
CN09_21550
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (326 aa)
   
          0.590
CN09_20875
Glutamate-1-semialdehyde aminotransferase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family (410 aa)
 
     
  0.576
CN09_30330
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (304 aa)
   
          0.575
CN09_26670
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (291 aa)
   
          0.558
CN09_20890
C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (331 aa)
              0.520
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (10%) [HD]