STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_20920Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology (223 aa)    
Predicted Functional Partners:
CN09_20915
Sugar kinase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.982
CN09_20925
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.971
CN09_20930
Aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.882
CN09_20910
Converts D-sorbitol to L-sorbose; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family
 
     0.784
CN09_14965
ROK family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.701
CN09_20905
Iditol 2-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.691
CN09_14980
Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.634
CN09_27915
Uridylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.614
CN09_23520
Ribose ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family
       0.613
CN09_14975
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family
       0.586
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (9%) [HD]
STRING is part of the ELIXIR infrastructure: it is one of ELIXIR's Core Data Resources.  Learn more >