STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_20980MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology (260 aa)    
Predicted Functional Partners:
CN09_20970
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
    
0.921
CN09_20975
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family
   
 
 0.742
CN09_20960
Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
   0.730
CN09_20945
Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.653
CN09_20965
Sugar ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.632
CN09_20950
Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.625
CN09_20935
DeoR faimly transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.615
CN09_20905
Iditol 2-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 0.584
CN09_03380
2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 
 0.527
CN09_20955
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family
     
 0.498
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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