CN09_20995 protein (Agrobacterium rhizogenes)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

CN09_20995

Protein iolH; Derived by automated computational analysis using gene prediction method- Protein Homology (301 aa)

Predicted Functional Partners:

CN09_20990

0.882

CN09_20985

0.865

CN09_34410

0.831

CN09_01360

0.829

CN09_21015

0.804

CN09_21005

0.759

CN09_21000

0.750

CN09_01365

0.728

CN09_34405

0.706

CN09_21010

0.680

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

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node1	node2	node1 annotation	node2 annotation	score
CN09_01360	CN09_01365	AP endonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology	Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.972
CN09_01360	CN09_20985	AP endonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.705
CN09_01360	CN09_20990	AP endonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology	Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.849
CN09_01360	CN09_20995	AP endonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology	Protein iolH; Derived by automated computational analysis using gene prediction method- Protein Homology	0.829
CN09_01360	CN09_21000	AP endonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.485
CN09_01360	CN09_21005	AP endonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family	0.507
CN09_01360	CN09_21010	AP endonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.558
CN09_01360	CN09_21015	AP endonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.681
CN09_01360	CN09_34405	AP endonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.634
CN09_01360	CN09_34410	AP endonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology	Myo-inositol 2-dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.935
CN09_01365	CN09_01360	Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology	AP endonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.972
CN09_01365	CN09_20985	Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.554
CN09_01365	CN09_20995	Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology	Protein iolH; Derived by automated computational analysis using gene prediction method- Protein Homology	0.728
CN09_01365	CN09_21015	Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.635
CN09_01365	CN09_34405	Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.455
CN09_01365	CN09_34410	Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology	Myo-inositol 2-dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.672
CN09_20985	CN09_01360	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	AP endonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.705
CN09_20985	CN09_01365	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.554
CN09_20985	CN09_20990	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.869
CN09_20985	CN09_20995	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Protein iolH; Derived by automated computational analysis using gene prediction method- Protein Homology	0.865