STRINGSTRING
CN09_21005 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_21005" - ABC transporter permease in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_21005ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (335 aa)    
Predicted Functional Partners:
CN09_21000
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (262 aa)
   
  0.990
CN09_21010
Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (327 aa)
     
  0.931
CN09_20995
Protein iolH; Derived by automated computational analysis using gene prediction method- Protein Homology (301 aa)
 
     
  0.759
CN09_11595
5-deoxyglucuronate isomerase; Derived by automated computational analysis using gene prediction method- Protein Homology (265 aa)
 
     
  0.714
CN09_29870
Branched-chain amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (332 aa)
   
          0.713
CN09_34420
Ribonucleotide-diphosphate reductase subunit alpha; Derived by automated computational analysis using gene prediction method- Protein Homology (258 aa)
   
  0.705
CN09_34430
Sugar ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (343 aa)
     
  0.701
CN09_11580
5-dehydro-2-deoxygluconokinase; Derived by automated computational analysis using gene prediction method- Protein Homology (644 aa)
 
     
  0.697
CN09_29865
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (340 aa)
   
          0.669
CN09_21015
LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (345 aa)
 
     
  0.619
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (6%) [HD]