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CN09_21025 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_21025" - Monooxygenase in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_21025Monooxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology (409 aa)    
Predicted Functional Partners:
CN09_21035
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (445 aa)
 
          0.900
CN09_21055
5,10-methylene tetrahydromethanopterin reductase; Derived by automated computational analysis using gene prediction method- Protein Homology (474 aa)
     
  0.876
CN09_21030
Branched-chain amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (265 aa)
            0.875
CN09_23120
Alkanesulfonate monooxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology (369 aa)
 
     
  0.828
CN09_21045
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (293 aa)
 
          0.703
CN09_25800
5,10-methylene tetrahydromethanopterin reductase; Derived by automated computational analysis using gene prediction method- Protein Homology (465 aa)
     
  0.683
CN09_21040
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the binding-protein-dependent transport system permease family (353 aa)
 
          0.680
CN09_32620
N5,N10-methylene tetrahydromethanopterin reductase; Derived by automated computational analysis using gene prediction method- Protein Homology (452 aa)
     
  0.652
CN09_30230
Luciferase; Derived by automated computational analysis using gene prediction method- Protein Homology (392 aa)
 
     
  0.638
CN09_21050
ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (255 aa)
              0.587
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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