STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_210555,10-methylene tetrahydromethanopterin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology (474 aa)    
Predicted Functional Partners:
CN09_21025
Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology
   
 0.876
CN09_21045
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family
       0.868
CN09_21040
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family
       0.866
CN09_21050
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.862
CN09_30240
Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology
   
 0.725
CN09_32625
Acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 0.665
CN09_32630
Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 0.657
CN09_05640
Acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 0.641
CN09_25825
Acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 0.637
CN09_25820
Acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 0.633
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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