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CN09_21080 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_21080" - AraC family transcriptional regulator in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
CN09_21080AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (336 aa)    
Predicted Functional Partners:
CN09_01650
Sarcosine oxidase subunit delta; Derived by automated computational analysis using gene prediction method- Protein Homology (121 aa)
 
          0.830
CN09_01660
Sarcosine oxidase subunit gamma; Derived by automated computational analysis using gene prediction method- Protein Homology (182 aa)
 
          0.770
CN09_07015
Serine dehydratase; Derived by automated computational analysis using gene prediction method- Protein Homology (468 aa)
         
  0.703
CN09_21085
Hydroxyproline-2-epimerase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the proline racemase family (332 aa)
              0.681
CN09_21090
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (283 aa)
 
          0.645
CN09_21095
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (282 aa)
 
          0.644
CN09_21100
Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (363 aa)
 
          0.621
CN09_21105
Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (283 aa)
 
          0.618
CN09_24065
Glutathione S-transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (245 aa)
              0.615
CN09_21110
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (448 aa)
 
          0.555
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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