CN09_21095 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_21095

ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology (282 aa)

Predicted Functional Partners:

CN09_21100

0.973

CN09_21105

0.959

CN09_21090

0.926

CN09_05775

0.894

CN09_26055

0.894

CN09_03905

0.891

CN09_03915

0.849

CN09_21085

0.820

polA

0.796

CN09_26045

0.753

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_03905	CN09_03915	CN09_03905	CN09_03915	Hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.998
CN09_03905	CN09_21090	CN09_03905	CN09_21090	Hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.892
CN09_03905	CN09_21095	CN09_03905	CN09_21095	Hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.891
CN09_03905	CN09_21105	CN09_03905	CN09_21105	Hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.866
CN09_03905	CN09_26045	CN09_03905	CN09_26045	Hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.697
CN09_03905	polA	CN09_03905	CN09_13050	Hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity	0.856
CN09_03915	CN09_03905	CN09_03915	CN09_03905	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology	0.998
CN09_03915	CN09_05775	CN09_03915	CN09_05775	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Glycine/betaine ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.838
CN09_03915	CN09_21090	CN09_03915	CN09_21090	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.859
CN09_03915	CN09_21095	CN09_03915	CN09_21095	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.849
CN09_03915	CN09_21100	CN09_03915	CN09_21100	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.799
CN09_03915	CN09_21105	CN09_03915	CN09_21105	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.848
CN09_03915	CN09_26055	CN09_03915	CN09_26055	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Glycine/betaine ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.836
CN09_03915	polA	CN09_03915	CN09_13050	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity	0.836
CN09_05775	CN09_03915	CN09_05775	CN09_03915	Glycine/betaine ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.838
CN09_05775	CN09_21090	CN09_05775	CN09_21090	Glycine/betaine ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.894
CN09_05775	CN09_21095	CN09_05775	CN09_21095	Glycine/betaine ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.894
CN09_05775	CN09_21105	CN09_05775	CN09_21105	Glycine/betaine ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology	Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.872
CN09_05775	CN09_26045	CN09_05775	CN09_26045	Glycine/betaine ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.808
CN09_05775	polA	CN09_05775	CN09_13050	Glycine/betaine ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity	0.856

page 1 of 5

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About